Journal: Structure (London, England : 1993)
Article Title: KNL1 binding to PP1 and microtubules is mutually exclusive
doi: 10.1016/j.str.2018.06.013
Figure Lengend Snippet: (A) KNL1 domain structure, highlighting the putative protein interaction sites (microtubule, MT, blue; PP1, magenta). The PP1 binding domain is hypothesized to contain three established PP1 binding SLiMs, namely the SILK, RVxF and ΦΦ motifs, while the putative MT binding domain is positively charged. The constructs and variants examined in this study are shown below.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Bacterial Strains E.coli BL21 (DE3) RIL expression strain Agilent Cat#230140 E.coli BL21 (DE3) Gold expression strain Agilent Cat #230132 Recombinant DNA GFP-KNL-1 wt Hardened Addgene Id 45223 pET-M30-MBP-TEV-KNL1 1–150 This study N/A pET-M30-MBP-TEV-KNL1 1–80 This study N/A pET-M30-MBP-TEV-KNL1 23–80 This study N/A pET-M30-MBP-TEV-KNL1 22–80 This study N/A pET-M30-MBP-TEV-KNL1 1–80S24A This study N/A pET-M30-MBP-TEV-KNL1 1–80S24AS25A This study N/A pET-M30-MBP-TEV-KNL1 1–80S60A This study N/A pET-M30-MBP-TEV-KNL1 1–80SILK/AAAA This study N/A pET-M30-MBP-TEV-KNL1 1–80S24DS25D This study N/A pET-M30-MBP-TEV-KNL1 1–80S56D This study N/A pET-M30-MBP-TEV-KNL1 1–80S60D This study N/A pGEX-Aurora-INCENP or AUKB M. Bollean Laboratory Available on request pRRP1B-Thio 6 -His 6 TEV-PP1 γ 7–323 Addgene Id 51770 pRRP1B-Thio 6 -His 6 TEV PP1 α 7–330 Addgene Id 51768 pRRP1B-Thio 6 -His 6 TEV- PP1 α 7–300 Addgene Id 26566 Chemicals, Peptides, and Recombinant Proteins Tubulin protein ( 99% pure, Porcine brain) Cytoskeleton, Inc. Cat #T240 General Tubulin Buffer Cytoskeleton, Inc. Cat # BST06 Tubulin Glycerol Buffer Cytoskeleton, Inc. Cat # BST05 GTP Cytoskeleton, Inc. Cat # BST06 Paclitaxel Cytoskeleton, Inc. (Cat. # TXD01) Gro 7 Chaperone Takara clonetch Cat #3340 Critical Commercial Assays Microtubule Binding protein Spin Down Assay Biochem Kit Cytoskeleton, Inc. Cat # BK029 QuikChange site directed mutagenesis Kit Agilent Cat# 200524 PDB search model Kelker (2009) PDBID: 3E7A Deposited Data BMRB (NMR assignment KNL-1 1–80 and pKNL-1 1–80 This study BMRBID: 27057, 27066 PDB This study PDBID: 6CZO Software and Algorithms Topspin 3.1 and 3.2 Bruker https://www.bruker.com UCSF SPARKY Goddard et al., 2004 https://www.cgl.ucsf.edu/home/sparky/ NMR Pipe Delaglio et al., 1995 https://www.ibbr.umd.edu/nmrpipe/install.html CARA www.cara.nmr.ch www.cara.nmr.ch PHENIX Zwart et al., 2008 https://www.phenix-online.org/ COOT Emsley et al., 2010 https://www.ccp4.ac.uk Pymol Schrodinger, LLC https://www.pymol.org NITPIC Brautigam (2015) http://biophysics.swmed.edu/MBR/software.html SEDPHAT Zhao et al. 2015 http://biophysics.swmed.edu/MBR/software.html GUSSI Brautigam (2015) http://www.biophysics.bioc.cam.ac.uk/?p=736 XDS Kabsch,W (2010) http://homes.mpimf-heidelberg.mpg.de/~kabsch/xds Open in a separate window KEY RESOURCE TABLE (uploaded separately)
Techniques: Binding Assay, Construct